Dr. Matthias Samwald

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Postdoctoral Researcher

matthias [dot] samwald [at] deri [dot] org

Matthias worked with DERI Galway as Postdoctoral Researcher from to Mar 2011

Unit

Health Care and Life Sciences Domain

Publications

Emerging best practices for mapping life sciences data to RDF - a case series

M. Scott Marshall, Richard Boyce, Jun Zhao, Egon L Willighagen, Helena Deus, Matthias Samwald, Elgar Pichler, Janos Hajagos, Eric Prudhommeaux, Susie Stephens

Journal of Web Semantics
,
(accepted)
,
Elsevier
,
2012
.
Journal / Refereed Original Article
- Read more about Emerging best practices for mapping life sciences data to RDF - a case series
Establishing a distributed system for the simple representation and integration of diverse scientific assertions

Matthias Samwald, Holger Stenzhorn

Journal of Biomedical Semantics
,
2009
.
http://www.jbiomedsem.com/content/1/S1/S5
Journal / Refereed Original Article
- Read more about Establishing a distributed system for the simple representation and integration of diverse scientific assertions
Structured Digital Tables on the Semantic Web

Kei-Hoi Cheung, Matthias Samwald, Raymond Auerbach, Mark B. Gerstein

Nature Molecular Systems Biology (to appear)
,
2009
.
Journal / Refereed Original Article
- Read more about Structured Digital Tables on the Semantic Web
Entrez Neuron RDFa: a pragmatic Semantic Web application for data integration in neuroscience research

Matthias Samwald, Ernest Lim, Peter Masiar, Luis Marenco, Huajun Chen, Thomas Morse, Pradeep Mutalik, Gordon Shepherd, Perry Miller, Kei-Hoi Cheung

K.-P. Adlassnig, B. Blobel, J. Mantas, I. Masic

Proceedings of the International Conference of the European Federation for Medical Informatics, 2009
,
Studies in Health Technology and Informatics
,
150
,
2009
.
http://booksonline.iospress.nl/Content/View.aspx?piid=13135
Conference Paper
- Read more about Entrez Neuron RDFa: a pragmatic Semantic Web application for data integration in neuroscience research
Creating a Translational Medicine Ontology

Christine Denney, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Sam Cheng, John Hart, John Hill, Joanne Luciano, John Madden, Mark Musen , Elgar Pichler, Matthias Samwald, Sándor Szalma, Lynn Schriml, Dav

The Sixth International Workshop of Data Integration in the Life Sciences
,
2009
.
Poster
- Read more about Creating a Translational Medicine Ontology
Linked Data for Connecting Traditional Chinese Medicine and Western Medicine

Jun Zhao, Anja Jentzsch, Matthias Samwald, Kei-Hoi Cheung

The Sixth International Workshop of Data Integration in the Life Sciences
,
2009
.
Poster
- Read more about Linked Data for Connecting Traditional Chinese Medicine and Western Medicine
Simple, ontology-based representation of biomedical statements through fine-granular entity tagging and new web standards

Matthias Samwald, Holger Stenzhorn

Bio-Ontologies 2009
,
2009
.
Conference Paper
- Read more about Simple, ontology-based representation of biomedical statements through fine-granular entity tagging and new web standards
Federating Distributed Social Data to Build an Interlinked Online Information Society

Alexandre Passant, Matthias Samwald, John Breslin, Stefan Decker

Proceedings of the WebSci'09: Society On-Line, 18-20 March 2009, Athens, Greece.
,
2009
.
http://journal.webscience.org/179/
Conference Paper
- Read more about Federating Distributed Social Data to Build an Interlinked Online Information Society
Life sciences on the Semantic Web: the Neurocommons and beyond

Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall

Briefings in Bioinformatics
,
Oxford University Press
,
2009
.
http://dx.doi.org/10.1093/bib/bbp004
Journal / Refereed Original Article
- Read more about Life sciences on the Semantic Web: the Neurocommons and beyond
Approaches to Neuroscience Data Integration

Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis Marenco, Matthew E. Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller

Briefings in Bioinformatics
,
2008
.
http://bib.oxfordjournals.org/cgi/content/abstract/10/4/345
Journal / Refereed Original Article
- Read more about Approaches to Neuroscience Data Integration
A journey to Semantic Web query federation in the life sciences

Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, Adrian Paschke

BMC Bioinformatics
,
2008
.
http://www.biomedcentral.com/1471-2105/10/S10/S10
Journal / Refereed Original Article
- Read more about A journey to Semantic Web query federation in the life sciences
Das Semantic Web als Werkzeug in der biomedizinischen Forschung

Holger Stenzhorn, Matthias Samwald

In
Andreas Blumauer, Tassilo Pellegrini
(ed.),
Social Semantic Web: Web 2.0 - Was nun?
,
435-449
,
Springer
,
2008
.
http://www.springerlink.com/content/lku7475450074873/
Book Chapter
- Read more about Das Semantic Web als Werkzeug in der biomedizinischen Forschung
Previewing Semantic Web Pipes

Christian Morbidoni, Danh Le Phuoc, Axel Polleres, Matthias Samwald, Giovanni Tummarello

Proceedings of the 5th European Semantic Web Conference (ESWC2008)
,
Springer
,
2008
.
http://www.polleres.net/publications/morb-etal-2008.pdf
Demonstration
- Read more about Previewing Semantic Web Pipes
Simplifying Access to Large-Scale Health Care and Life Sciences Datasets

Holger Stenzhorn, Kavitha Srinivas, Matthias Samwald, Alan Ruttenberg

Proceedings of the 5th European Semantic Web Conference (ESWC2008)
,
Springer
,
2007
.
Demonstration
- Read more about Simplifying Access to Large-Scale Health Care and Life Sciences Datasets
The bio-zen plus ontology

Matthias Samwald, Klaus-Peter Adlassnig

Applied Ontology
,
3
(
4
), :
213-217
,
IOS Press
,
2007
.
http://dx.doi.org/10.3233/AO-2008-0053
Journal / Refereed Original Article
- Read more about The bio-zen plus ontology
Entrez Neuron: an OWL/RDFa–based Web Application for Information Exploration and Integration in Neuroscience

Matthias Samwald, Ernest Lim, Peter Masiar, Luis Marenco, Huajun Chen, Thomas Morse, Gordon Shepherd, Perry Miller, Kei Cheung

Sematic Web for Health Care and Life Sciences Workshop
Workshop at
17th International World Wide Web Conference
,
2007
.
Workshop Paper
- Read more about Entrez Neuron: an OWL/RDFa–based Web Application for Information Exploration and Integration in Neuroscience
Semantic SenseLab: implementing the vision of the Semantic Web in neuroscience

Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis Marenco, Perry Miller, Gordon Shepherd, Kei-Hoi Cheung

Artificial Intelligence in medicine
,
1999
.
http://dx.doi.org/10.1016/j.artmed.2009.11.003
Journal / Refereed Original Article
- Read more about Semantic SenseLab: implementing the vision of the Semantic Web in neuroscience

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Dr. Matthias Samwald

Primary tabs

Unit

Publications

Emerging best practices for mapping life sciences data to RDF - a case series

Establishing a distributed system for the simple representation and integration of diverse scientific assertions

Structured Digital Tables on the Semantic Web

Entrez Neuron RDFa: a pragmatic Semantic Web application for data integration in neuroscience research

Creating a Translational Medicine Ontology

Linked Data for Connecting Traditional Chinese Medicine and Western Medicine

Simple, ontology-based representation of biomedical statements through fine-granular entity tagging and new web standards

Federating Distributed Social Data to Build an Interlinked Online Information Society

Life sciences on the Semantic Web: the Neurocommons and beyond

Approaches to Neuroscience Data Integration

A journey to Semantic Web query federation in the life sciences

Das Semantic Web als Werkzeug in der biomedizinischen Forschung

Previewing Semantic Web Pipes

Simplifying Access to Large-Scale Health Care and Life Sciences Datasets

The bio-zen plus ontology

Entrez Neuron: an OWL/RDFa–based Web Application for Information Exploration and Integration in Neuroscience

Semantic SenseLab: implementing the vision of the Semantic Web in neuroscience

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Dr. Matthias Samwald

Primary tabs

Unit

Publications

Events

@deri

Jobs

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